[dev-db/mongodb] rebase patches and bump 6 series

dev-db/mongodb/files/mongodb-5.0.2-boost-1.79.patch

@@ -37,8 +37,8 @@ https://bugs.gentoo.org/844235
  #include <boost/filesystem.hpp>
 +#include <boost/filesystem/fstream.hpp>
  #include <boost/filesystem/path.hpp>
- 
- #include "mongo/base/simple_string_data_comparator.h"
+ #include <pcrecpp.h>
+
 --- a/src/mongo/shell/shell_utils_extended.cpp
 +++ b/src/mongo/shell/shell_utils_extended.cpp
 @@ -37,6 +37,7 @@

dev-db/mongodb/files/mongodb-5.0.28-gcc-11.patch

@@ -7,6 +7,6 @@ https://bugs.gentoo.org/768339
  #include <string>
  #include <vector>
 +#include <optional>
-
- #include "mongo/db/index/multikey_paths.h"
  
+ #include "mongo/db/index/multikey_paths.h"
+ #include "mongo/db/jsobj.h"

dev-db/mongodb/files/mongodb-6.0.17-boost-1.79.patch

@@ -47,8 +47,8 @@ https://bugs.gentoo.org/844235
  #include <boost/filesystem.hpp>
 +#include <boost/filesystem/fstream.hpp>
  #include <boost/filesystem/path.hpp>
- 
- #include "mongo/base/simple_string_data_comparator.h"
+ #include <pcrecpp.h>
+
 --- a/src/mongo/shell/shell_utils_extended.cpp
 +++ b/src/mongo/shell/shell_utils_extended.cpp
 @@ -37,6 +37,7 @@